[CWB] Installing from svn on ubuntu 11.10

["Andrés Chandía"]

I have done something wrong, but I don't know what. I have followed the tutorial 3 o 4 times,
but always the same;
the only thing I see as a probable cause of problem is that I really
don't understand what you mean with:

the new user also needs GRANT FILE ON *.*

well, this is what I get after doing "php
cqpweb-autoconfig.php" at the web if I go to 

http://your-server.net/path/to/cqpweb/web/directory/adm


CQPweb encountered an error and could not continue.
You do not have permission to use this program.
... in file
/mnt/vmdata/vParles/web/llocs/cqp/lib/adminhome.inc.php line
53.


    
        
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_______________________
            andrés
chandía

P No imprima
innecesariamente. ¡Cuide el medio ambiente!

On Wed, October 26, 2011
12:58 pm, Giovanni Marco Dall'Olio wrote:
  


2011/10/26 "Andrés Chandía" andres at chandia.net>
  Perfect, I did it
this way:

:~/$ sudo rm -rf cwb-perl/CWB-CQI
:~/$ sudo svn co https://cwb.svn.sourceforge.net/svnroot/cwb/perl/trunk
cwb-perl


Don't call svn as a super user, it's dangerous and you don't need it.
  
You can just do:

:~/$ sudo rm -rf cwb-perl/CWB-CQI
:~/$ svn co https://cwb.svn.sourceforge.net/svnroot/cwb/perl/trunk
cwb-perl
:~$ cd cwb-perl/CWB-CQI/
:~/cwb-perl/CWB-CQI$ sudo perl
Makefile.PLÂ  --config /usr/local/cwb-3.4.0/bin/cwb-config

 



Checking if your kit is complete...
  Looks good


Writing Makefile for CWB::CQI

:~/cwb-perl/CWB-CQI$ sudo make
cp
lib/CWB/CQI.pm blib/lib/CWB/CQI.pm
cp lib/CWB/CQI/Server.pm blib/lib/CWB/CQI/Server.pm
cp lib/CWB/CQI/IOClient.pm blib/lib/CWB/CQI/IOClient.pm
cp lib/CWB/CQI/Client.pm
blib/lib/CWB/CQI/Client.pm
Manifying blib/man3/CWB::CQI::IOClient.3pm
Manifying
blib/man3/CWB::CQI::Server.3pm
Manifying blib/man3/CWB::CQI::Client.3pm

:~/cwb-perl/CWB-CQI$ sudo make test

PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM"
"-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/00_load.t
........... ok   
t/01_load_ioclient.t ..
ok   

t/10_vss.t ............ 1/31 # CQP query: "small"%c (","?
[pos="JJ.*"])* [pos="NN.*"]
t/10_vss.t ............
ok     
t/11_vss_ioclient.t ...
ok     
All tests successful.
Files=4, Tests=66,  1 wallclock secs ( 0.04 usr  0.00 sys
+  0.24 cusr  0.04 csys =  0.32 CPU)
Result: PASS

:~/cwb-perl/CWB-CQI$ sudo make install
Installing
/usr/local/share/perl/5.12.4/CWB/CQI/Server.pm
Installing
/usr/local/man/man3/CWB::CQI::Server.3pm
Installing
/usr/local/man/man3/CWB::CQI::IOClient.3pm
Installing
/usr/local/man/man3/CWB::CQI::Client.3pm
Appending installation info to
/usr/local/lib/perl/5.12.4/perllocal.pod



_______________________
            andrés
chandía

P
No imprima innecesariamente.
¡Cuide el medio ambiente!


On Tue, October 25, 2011 7:21 pm, Stefan Evert wrote:
-> 
->> Now, at the
CWB-CQI installation in make test i got some error but make install went well,
->>
is this something to worry about?
-> 
-> Only if you want to use the CQi
interface ...
-> 
-> That's actually a buglet in the CWB::CQI::Server module,
which expects the cqpserver binary to
-> be in the standard search path (so it can be
invoked with system "cqpserver ..." from Perl). 
-> This should really be
pulled from the configuration information in the CWB module, but that
-> hasn't been
implemented yet because CWB-CQI doesn't depend on the basic CWB/Perl package.
-> 
-> If you need CWB-CQI to work, there are two possible workarounds:
-> 
-> 1) Add /usr/local/cwb-3.4.0/bin to your path
-> 
-> 2) Check out the
latest SVN copy, where I've fixed the bug (not tested thoroughly, so I'd be
->
interested to hear if this fixes the problem for you)
-> 
-> Cheers,
-> Stefan
-> 
-> _______________________________________________
-> CWB mailing list
-> CWB at sslmit.unibo.it
-> http://devel.sslmit.unibo.it/mailman/listinfo/cwb
  ->
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-- 
Giovanni Dall'Olio, phd student
Department of
Biologia Evolutiva at CEXS-UPF (Barcelona, Spain)

My blog on bioinformatics: http://bioinfoblog.it
  
  
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