<br><br><div class="gmail_quote">2011/10/26 "Andrés Chandía" <span dir="ltr"><<a href="mailto:andres@chandia.net">andres@chandia.net</a>></span><br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
Perfect, I did it this way:<br><br>:~/$ sudo rm -rf cwb-perl/CWB-CQI<br>:~/$ sudo svn co
<a href="https://cwb.svn.sourceforge.net/svnroot/cwb/perl/trunk" target="_blank">https://cwb.svn.sourceforge.net/svnroot/cwb/perl/trunk</a> cwb-perl<br></blockquote><div><br>Don't call svn as a super user, it's dangerous and you don't need it.<br>
<br>You can just do:<br><br>:~/$ sudo rm -rf cwb-perl/CWB-CQI<br>:~/$ svn co
<a href="https://cwb.svn.sourceforge.net/svnroot/cwb/perl/trunk" target="_blank">https://cwb.svn.sourceforge.net/svnroot/cwb/perl/trunk</a> cwb-perl<br>:~$ cd
cwb-perl/CWB-CQI/<br>:~/cwb-perl/CWB-CQI$ sudo perl Makefile.PL --config
/usr/local/cwb-3.4.0/bin/cwb-config<br><br> <br><br></div><blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;"><div class="im">Checking if your kit is complete...<br>
Looks
good<br></div><br>Writing Makefile for CWB::CQI<br><br>:~/cwb-perl/CWB-CQI$ sudo make<br>cp
lib/CWB/CQI.pm blib/lib/CWB/CQI.pm<br>cp lib/CWB/CQI/Server.pm blib/lib/CWB/CQI/Server.pm<br>cp lib/CWB/CQI/IOClient.pm blib/lib/CWB/CQI/IOClient.pm<br>cp lib/CWB/CQI/Client.pm
blib/lib/CWB/CQI/Client.pm<br>Manifying blib/man3/CWB::CQI::IOClient.3pm<br>Manifying
blib/man3/CWB::CQI::Server.3pm<br>Manifying blib/man3/CWB::CQI::Client.3pm<br><br>:~/cwb-perl/CWB-CQI$ sudo make test<div class="im"><br>PERL_DL_NONLAZY=1 /usr/bin/perl
"-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib',
'blib/arch')" t/*.t<br>t/00_load.t ........... ok <br>t/01_load_ioclient.t .. ok <br></div>t/10_vss.t ............ 1/31 # CQP query:
"small"%c (","? [pos="JJ.*"])* [pos="NN.*"]<br>t/10_vss.t ............ ok <br>t/11_vss_ioclient.t ...
ok <br>All tests successful.<br>Files=4, Tests=66, 1
wallclock secs ( 0.04 usr 0.00 sys + 0.24 cusr 0.04 csys = 0.32
CPU)<br>Result: PASS<br><br>:~/cwb-perl/CWB-CQI$ sudo make install<br>Installing
/usr/local/share/perl/5.12.4/CWB/CQI/Server.pm<br>Installing
/usr/local/man/man3/CWB::CQI::Server.3pm<br>Installing
/usr/local/man/man3/CWB::CQI::IOClient.3pm<br>Installing
/usr/local/man/man3/CWB::CQI::Client.3pm<br>Appending installation info to
/usr/local/lib/perl/5.12.4/perllocal.pod<div class="im"><br><br><br>_______________________<br> andrés
chandía<br><a title="This external link will open in a new window" href="http://www.chandia.net" target="_blank"><img src="" alt="chandia.net" border="0"></a><br><span style="font-size:18pt;color:rgb(79, 98, 40);font-family:Webdings">P </span><span style="font-size:10pt;color:rgb(79, 98, 40)">No imprima
innecesariamente. ¡Cuide el medio ambiente!</span><br><br></div>On Tue, October 25, 2011
7:21 pm, Stefan Evert wrote:<br>-> <br>->> Now, at the CWB-CQI installation in
make test i got some error but make install went well,<br>->> is this something to
worry about?<br>-> <br>-> Only if you want to use the CQi interface ...<br>->
<br>-> That's actually a buglet in the CWB::CQI::Server module, which expects the
cqpserver binary to<br>-> be in the standard search path (so it can be invoked with
system "cqpserver ..." from Perl). <br>-> This should really be pulled from the
configuration information in the CWB module, but that<br>-> hasn't been implemented yet
because CWB-CQI doesn't depend on the basic CWB/Perl package.<br>-> <br>-> If you
need CWB-CQI to work, there are two possible workarounds:<br>-> <br>-> 1) Add
/usr/local/cwb-3.4.0/bin to your path<br>-> <br>-> 2) Check out the latest SVN copy,
where I've fixed the bug (not tested thoroughly, so I'd be<br>-> interested to hear if
this fixes the problem for you)<br>-> <br>-> Cheers,<br>-> Stefan<br>->
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<br></blockquote></div><br><br clear="all"><br>-- <br>Giovanni Dall'Olio, phd student<br>Department of Biologia Evolutiva at CEXS-UPF (Barcelona, Spain)<br><br>My blog on bioinformatics: <a href="http://bioinfoblog.it">http://bioinfoblog.it</a><br>
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